Tissue-specific histone modification and transcription factor binding in alpha globin gene expression

Blood. 2007 Dec 15;110(13):4503-10. doi: 10.1182/blood-2007-06-097964. Epub 2007 Aug 22.

Abstract

To address the mechanism by which the human globin genes are activated during erythropoiesis, we have used a tiled microarray to analyze the pattern of transcription factor binding and associated histone modifications across the telomeric region of human chromosome 16 in primary erythroid and nonerythroid cells. This 220-kb region includes the alpha globin genes and 9 widely expressed genes flanking the alpha globin locus. This un-biased, comprehensive analysis of transcription factor binding and histone modifications (acetylation and methylation) described here not only identified all known cis-acting regulatory elements in the human alpha globin cluster but also demonstrated that there are no additional erythroid-specific regulatory elements in the 220-kb region tested. In addition, the pattern of histone modification distinguished promoter elements from potential enhancer elements across this region. Finally, comparison of the human and mouse orthologous regions in a unique mouse model, with both regions coexpressed in the same animal, showed significant differences that may explain how these 2 clusters are regulated differently in vivo.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylation
  • Animals
  • Cells, Cultured
  • Chromosomes, Human, Pair 16
  • Enhancer Elements, Genetic
  • Erythroblasts / immunology
  • Gene Expression Regulation
  • Globins / genetics*
  • Histones / metabolism*
  • Humans
  • K562 Cells
  • Methylation
  • Mice
  • Promoter Regions, Genetic
  • T-Lymphocytes / cytology
  • Telomere
  • Transcription Factors / metabolism*
  • Transcription, Genetic / genetics*

Substances

  • Histones
  • Transcription Factors
  • Globins