Detection of unlabeled oligonucleotide targets using whispering gallery modes in single, fluorescent microspheres

Small. 2007 Aug;3(8):1408-14. doi: 10.1002/smll.200600676.

Abstract

The development of an inexpensive, highly sensitive, whispering gallery mode (WGM) based biosensing system is demonstrated. The system comprises a silica microsphere functionalized with a fluorophore and a dense monolayer of single-strand oligonucleotides. The adsorption of the complementary strand causes spectral shifts in the emission spectrum of the microsphere that can be registered using a conventional optical microscope and CCD detector. The system is capable of detecting low-abundance, unlabeled-oligonucleotide targets. The spectral shifts can be used to monitor both the hybridization kinetics and the denaturation of the double-strand DNA at elevated temperatures. The hybridization appears to be completely reversible. Complementary oligonucleotide probes more than 30 bases in length are most readily detected while a complete assay takes only a few minutes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biosensing Techniques / methods*
  • DNA / chemistry*
  • DNA / genetics*
  • In Situ Hybridization, Fluorescence / methods*
  • Microspheres
  • Nanotechnology / methods*
  • Oligonucleotide Array Sequence Analysis / methods*
  • Spectrometry, Fluorescence / methods*
  • Staining and Labeling

Substances

  • DNA