Highly effective quenching of the ultrafast radiationless decay of photoexcited pyrimidine bases by covalent modification: photophysics of 5,6-trimethylenecytosine and 5,6-trimethyleneuracil

Phys Chem Chem Phys. 2007 Jul 7;9(25):3206-9. doi: 10.1039/b704001f. Epub 2007 May 25.

Abstract

5,6-Trimethylenecytosine (TMC) and 5,6-trimethyleneuracil (TMU), in which the twist of the C5-C6 bond (or the pyrimidalization of C5) is strongly hindered, do not exhibit the subpicosecond excited-state lifetime characteristic of the naturally occurring pyrimidine bases. This result demonstrates the important role the out-of-plane deformation of the six-membered ring plays in the ultrafast (subpicosecond) internal conversion of photoexcited nucleobases. The dramatically shorter fluorescence lifetime of TMU ( approximately 30 ps) relative to TMC ( approximately 1.2 ns), in aqueous solution at room temperature, is attributed to the presence in TMU of an efficient, secondary nonradiative decay channel of S(1)(pipi*) involving a low-lying (1)npi* state.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Carbon / chemistry
  • Cytosine / analogs & derivatives*
  • Cytosine / chemistry
  • Fluorescence
  • Hydrogen-Ion Concentration
  • Molecular Structure
  • Photochemistry*
  • Pyrimidines / chemistry*
  • Spectrometry, Fluorescence
  • Thermodynamics
  • Time Factors
  • Uracil / analogs & derivatives*
  • Uracil / chemistry

Substances

  • 5,6-trimethylenecytosine
  • 5,6-trimethyleneuracil
  • Pyrimidines
  • Uracil
  • Carbon
  • Cytosine
  • pyrimidine