Symmetry operation measures

J Comput Chem. 2008 Jan 30;29(2):190-7. doi: 10.1002/jcc.20772.

Abstract

We introduce a new mathematical tool for quantifying the symmetry contents of molecular structures: the Symmetry Operation Measures. In this approach, we measure the minimal distance between a given structure and the structure which is obtained after applying a selected symmetry operation on it. If the given operation is a true symmetry operation for the structure, this distance is zero; otherwise it gives an indication of how different the transformed structure is from the original one. Specifically, we provide analytical solutions for measures of all the improper rotations, S n p, including mirror symmetry and inversion, as well as for all pure rotations, C n p. These measures provide information complementary to the Continuous Symmetry Measures (CSM) that evaluate the distance between a given structure and the nearest structure which belongs to a selected symmetry point-group.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Absorption
  • Algorithms*
  • Computational Biology / methods*
  • Computer Simulation
  • Molecular Structure*
  • Rotation
  • Weights and Measures