Gene cloning, expression, and substrate specificity of an imidase from the strain Pseudomonas putida YZ-26

Curr Microbiol. 2007 Jul;55(1):61-4. doi: 10.1007/s00284-005-0455-6. Epub 2007 May 28.

Abstract

A gene-encoding imidase was isolated from Pseudomonas putdia YZ-26 genomic DNA using a combination of polymerase chain reaction and activity screening the recombinant. Analysis of the nucleotide sequence revealed that an open reading frame (ORF) of 879 bp encoded a protein of 293 amino acids with a calculated molecular weight of 33712.6 kDa. The deduced amino-acid sequence showed 78% identity with the imidase from Alcaligenes eutrophus 112R4 and 80% identity with N-terminal 20 amino-acid imidase from Blastobacter sp. A17p-4. Next, the ORF was subcloned into vector pET32a to form recombinant plasmid pEI. The enzyme was overexpressed in Escherichia coli and purified to homogeneity by Ni(2+)-NTA column, with 75% activity recovery. The subunit molecular mass of the recombinant imidase as estimated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis was approximately 36 kDa, whereas its functional unit was approximately 141 kDa with four identical subunits determined by size-exclusion chromatography. The purified enzyme showed the highest activity and affinity toward succinimide, and some other substrates, such as dihydrouracil, hydantoin, succinimide, and maleimde, were investigated.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alcaligenes / genetics
  • Amidohydrolases / chemistry
  • Amidohydrolases / genetics*
  • Amidohydrolases / isolation & purification
  • Amidohydrolases / metabolism*
  • Amino Acid Sequence
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics*
  • Bacterial Proteins / isolation & purification
  • Bacterial Proteins / metabolism*
  • Base Sequence
  • Bradyrhizobiaceae / genetics
  • Chromatography, Gel
  • Cloning, Molecular
  • Electrophoresis, Polyacrylamide Gel
  • Escherichia coli / genetics
  • Gene Expression
  • Molecular Sequence Data
  • Molecular Weight
  • Open Reading Frames
  • Protein Subunits
  • Pseudomonas putida / enzymology*
  • Pseudomonas putida / genetics*
  • Recombinant Proteins / genetics
  • Recombinant Proteins / isolation & purification
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Substrate Specificity

Substances

  • Bacterial Proteins
  • Protein Subunits
  • Recombinant Proteins
  • Amidohydrolases
  • dihydropyrimidinase

Associated data

  • GENBANK/DQ093858