Fine-tuning of translation termination efficiency in Saccharomyces cerevisiae involves two factors in close proximity to the exit tunnel of the ribosome

Genetics. 2007 Nov;177(3):1527-37. doi: 10.1534/genetics.107.070771. Epub 2007 May 4.

Abstract

In eukaryotes, release factors 1 and 3 (eRF1 and eRF3) are recruited to promote translation termination when a stop codon on the mRNA enters at the ribosomal A-site. However, their overexpression increases termination efficiency only moderately, suggesting that other factors might be involved in the termination process. To determine such unknown components, we performed a genetic screen in Saccharomyces cerevisiae that identified genes increasing termination efficiency when overexpressed. For this purpose, we constructed a dedicated reporter strain in which a leaky stop codon is inserted into the chromosomal copy of the ade2 gene. Twenty-five antisuppressor candidates were identified and characterized for their impact on readthrough. Among them, SSB1 and snR18, two factors close to the exit tunnel of the ribosome, directed the strongest antisuppression effects when overexpressed, showing that they may be involved in fine-tuning of the translation termination level.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Carboxy-Lyases / genetics
  • Codon, Terminator
  • DNA, Fungal / genetics
  • Gene Expression
  • Genes, Fungal
  • Genes, Reporter
  • HSP70 Heat-Shock Proteins / genetics
  • HSP70 Heat-Shock Proteins / metabolism
  • Macromolecular Substances
  • Models, Molecular
  • Mutagenesis
  • Peptide Chain Termination, Translational*
  • Peptide Elongation Factor 1 / genetics
  • Peptide Elongation Factor 1 / metabolism
  • RNA, Fungal / chemistry
  • RNA, Fungal / genetics
  • RNA, Small Nucleolar / chemistry
  • RNA, Small Nucleolar / genetics
  • Ribosomes / chemistry
  • Ribosomes / metabolism*
  • Saccharomyces cerevisiae / genetics*
  • Saccharomyces cerevisiae / metabolism*
  • Saccharomyces cerevisiae Proteins / biosynthesis*
  • Saccharomyces cerevisiae Proteins / genetics*
  • Saccharomyces cerevisiae Proteins / metabolism

Substances

  • Codon, Terminator
  • DNA, Fungal
  • HSP70 Heat-Shock Proteins
  • Macromolecular Substances
  • Peptide Elongation Factor 1
  • RNA, Fungal
  • RNA, Small Nucleolar
  • SSB1 protein, S cerevisiae
  • Saccharomyces cerevisiae Proteins
  • Carboxy-Lyases
  • phosphoribosylaminoimidazole carboxylase