Diffusion in a tube of varying cross section: numerical study of reduction to effective one-dimensional description

J Chem Phys. 2007 Apr 7;126(13):134706. doi: 10.1063/1.2719193.

Abstract

Brownian dynamics simulations of the particle diffusing in a long conical tube (the length of the tube is much greater than its smallest radius) are used to study reduction of the three-dimensional diffusion in tubes of varying cross section to an effective one-dimensional description. The authors find that the one-dimensional description in the form of the Fick-Jacobs equation with a position-dependent diffusion coefficient, D(x), suggested by Zwanzig [J. Phys. Chem. 96, 3926 (1992)], with D(x) given by the Reguera-Rubi formula [Phys. Rev. E 64, 061106 (2001)], D(x)=D/sq rt1+R'(x)2, where D is the particle diffusion coefficient in the absence of constraints, and R(x) is the tube radius at x, is valid when |R'(x)|<or=1. When |R'(x)|>1, higher spatial derivatives of the one-dimensional concentration in the effective diffusion equation cannot be neglected anymore as was indicated by Kalinay and Percus [J. Chem. Phys. 122, 204701 (2005)]. Thus the reduction to the effective one-dimensional description is a useful tool only when |R'(x)|<or=1 since in this case one can apply the powerful standard methods to analyze the resulting diffusion equation.

Publication types

  • Research Support, N.I.H., Intramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chemistry, Physical / methods*
  • Diffusion
  • Entropy
  • Mathematics
  • Models, Statistical
  • Models, Theoretical
  • Thermodynamics