Modeling of the role of a Bax-activation switch in the mitochondrial apoptosis decision

Biophys J. 2007 Jun 15;92(12):4304-15. doi: 10.1529/biophysj.106.099606. Epub 2007 Mar 30.

Abstract

We performed in silico modeling of the regulatory network of mitochondrial apoptosis through which we examined the role of a Bax-activation switch in governing the mitochondrial apoptosis decision. Two distinct modeling methods were used in this article. One is continuous and deterministic, comprised of a set of ordinary differential equations. The other, carried out in a discrete manner, is based on a cellular automaton, which takes stochastic fluctuations into consideration. We focused on dynamic properties of the mitochondrial apoptosis regulatory network. The roles of Bcl-2 family proteins in cellular responses to apoptotic stimuli were examined. In our simulations, a self-amplification process of Bax-activation is indicated. Further analysis suggests that the core module of Bax-activation is bistable in both deterministic and stochastic models, and this feature is robust to noise and wide ranges of parameter variation. When coupling with Bax-polymerization, it forms a one-way-switch, which governs irreversible behaviors of Bax-activation even with attenuation of apoptotic stimulus. Together with the growing biochemical evidence, we propose a novel molecular switch mechanism embedded in the mitochondrial apoptosis regulatory network and give a plausible explanation for the all-or-none, irreversible character of mitochondrial apoptosis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Apoptosis / physiology*
  • Computer Simulation
  • Gene Expression Regulation / physiology*
  • Mitochondria / metabolism*
  • Mitochondrial Proteins / metabolism
  • Models, Biological*
  • Proto-Oncogene Proteins c-bcl-2 / metabolism*
  • Signal Transduction / physiology*
  • Stochastic Processes
  • bcl-2-Associated X Protein / metabolism*

Substances

  • Mitochondrial Proteins
  • Proto-Oncogene Proteins c-bcl-2
  • bcl-2-Associated X Protein