Characterization of the interaction of wheat germ protein synthesis initiation factor eIF-3 with mRNA oligonucleotide and cap analogues

Biochemistry. 1992 Jan 14;31(1):296-9. doi: 10.1021/bi00116a040.

Abstract

Direct fluorescence titration experiments of wheat germ protein synthesis initiation factor eIF-3 with mRNA cap and oligoribonucleotide analogues were performed in order to determine the equilibrium association constants (Keq) for the eIF-3.mRNA interaction as a function of pH and temperature. These data suggest that (i) the eIF-3.mRNA interaction is not cap-specific (i.e., m7G-specific), (ii) ATP hydrolysis is not involved in the interaction, and (iii) the interaction is primarily ionic in nature. Competition experiments between a rabbit alpha-globin mRNA oligoribonucleotide analogue and either mRNA cap analogues or nucleoside triphosphates (NTPs) are also reported; these experiments indicate that NTPs act as both activators and competitive inhibitors of the mRNA.eIF-3 association. The results are consistent with a partially uncompetitive binding mechanism, whereby at low NTP concentrations (less than or equal to 10 microM) the bound NTP enhances subsequent mRNA binding to eIF-3, perhaps by inducing a conformational change, and at higher NTP concentrations, the NTP acts as a competitive inhibitor for the mRNA binding site on eIF-3.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Adenosine Triphosphate / metabolism
  • Animals
  • Base Sequence
  • Binding, Competitive
  • Eukaryotic Initiation Factor-3
  • Hydrogen-Ion Concentration
  • Hydrolysis
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Oligonucleotides / genetics*
  • Peptide Initiation Factors / genetics*
  • Peptide Initiation Factors / isolation & purification
  • Plant Proteins / genetics*
  • Plant Proteins / isolation & purification
  • RNA Caps / metabolism*
  • Rabbits
  • Spectrometry, Fluorescence
  • Thermodynamics
  • Triticum / chemistry*

Substances

  • Eukaryotic Initiation Factor-3
  • Oligonucleotides
  • Peptide Initiation Factors
  • Plant Proteins
  • RNA Caps
  • Adenosine Triphosphate