This study presents the relationship between the dam hydrology and phytoplankton proliferations in a regulated river system in East Asia. A long-term ecological study reveals that multi-purpose dam regulation on river flow in the Nakdong River (South Korea) affects proliferating patterns of phytoplankton, especially during summer (June-August) and winter (December-next February) as Microcystis aeruginosa and Stephanodiscus hantzschii, respectively, dominate each season by over 80%. Eutrophication was observed in the lower Nakdong River (South Korea) (mean+/-standard deviation: nitrate-N, 2.8+/-0.9 mg L(-1); phosphate-P, 40.3+/-31.3 microg L(-1); chlorophyll a, 45.2+/-84.9 microg L(-1); n=449), and the limnological characteristics responded to climatic variations such as monsoon and summer typhoons. The river basin experiences concentrated rainfall during the rainy season (June-September, over ca. 60% of total annual rainfall). Correlation and cross-correlation for time-delayed relationship revealed the hydrological environments (i.e., quantity of dam storage and discharge) had significantly negative relationship with the population dynamics of the two bloom-forming species for up to the next 2 years. S. hantzschii had clearer relationship with dam storage and discharge, which might be due to the seasonality exhibited by the species. The results support the necessity of "smart flow control" which may enable destruction of bloom formation by the two species with an adequate pulse of discharge generated by upstream dams in the far-east Asian river systems. This would increase the efficiency of water resource management system.