Deinococcus yunweiensis sp. nov., a gamma- and UV-radiation-resistant bacterium from China

Int J Syst Evol Microbiol. 2007 Feb;57(Pt 2):370-375. doi: 10.1099/ijs.0.64292-0.

Abstract

A Gram-negative, non-spore-forming, non-motile, rod-shaped, red-pigmented strain, designated YIM 007T, was found as a contaminant on an agar plate in the laboratory of Yunnan Institute of Microbiology, China. The optimum growth pH and temperature for the isolate were 7.0-7.5 and 30 degrees C, respectively. The predominant respiratory quinone was MK-8. The polar lipid profile consisted mainly of various unknown phosphoglycolipids and glycolipids. The major cellular fatty acids were C(16 : 1)omega7c, C(16 : 0), C(17 : 0) and C(17 : 1)omega8c. l-Ornithine was detected in its peptidoglycan. The DNA G+C content was 64.1 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain YIM 007(T) showed 16S rRNA gene sequence similarity levels of 86.8-92.1 % to the other described Deinococcus species. Based on the high 16S rRNA gene sequence divergence and phenotypic differences, it is proposed that the unknown strain should be classified as a novel species in the genus Deinococcus with the name Deinococcus yunweiensis sp. nov. The type strain is YIM 007T (=KCTC 3962T=DSM 17005T).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteria
  • Bacterial Typing Techniques
  • Base Composition
  • Carbohydrate Metabolism
  • China
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Deinococcus / classification*
  • Deinococcus / isolation & purification*
  • Deinococcus / physiology
  • Deinococcus / radiation effects
  • Fatty Acids / analysis
  • Fatty Acids / chemistry
  • Gamma Rays*
  • Genes, rRNA
  • Hydrogen-Ion Concentration
  • Molecular Sequence Data
  • Movement
  • Ornithine / analysis
  • Peptidoglycan / chemistry
  • Phospholipids / analysis
  • Phospholipids / chemistry
  • Phylogeny
  • Pigments, Biological / biosynthesis
  • Quinones / analysis
  • Quinones / chemistry
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Spores, Bacterial
  • Temperature
  • Ultraviolet Rays*

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Peptidoglycan
  • Phospholipids
  • Pigments, Biological
  • Quinones
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Ornithine

Associated data

  • GENBANK/DQ344634