Exiguobacterium profundum sp. nov., a moderately thermophilic, lactic acid-producing bacterium isolated from a deep-sea hydrothermal vent

Int J Syst Evol Microbiol. 2007 Feb;57(Pt 2):287-292. doi: 10.1099/ijs.0.64639-0.

Abstract

A facultatively anaerobic, halotolerant, moderately thermophilic and non-sporulating bacterium, designated strain 10C(T), was isolated from deep-sea hydrothermal vent samples collected on the 13 degrees N East Pacific Rise at a depth of approximately 2600 m. Cells of strain 10C(T) were Gram-positive, motile rods, and grew optimally at 45 degrees C (range 12-49 degrees C), pH 7.0 (range pH 5.5-9.5) and 0-2 % NaCl (range 0-11 %). (+)-L-Lactate was the main organic acid detected from carbohydrate fermentation with traces of formate, acetate and ethanol. Strain 10C(T) was catalase-positive, oxidase-negative and reduced nitrate to nitrite under anaerobic conditions. The DNA G+C content was 50.4 mol%. Its closest phylogenetic relatives were Exiguobacterium aestuarii TF-16(T) and Exiguobacterium marinum TF-80(T) (16S rRNA gene sequence similarity >99 %). However, strain 10C(T) differed genotypically from these two Exiguobacterium species as indicated by DNA-DNA relatedness data. Therefore, on the basis of phenotypic, genotypic and phylogenetic characteristics, strain 10C(T) is considered to represent a novel species of the genus Exiguobacterium, for which the name Exiguobacterium profundum sp. nov. is proposed. The type strain is 10C(T) (=CCUG 50949(T)=DSM 17289(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anaerobiosis
  • Bacillaceae / classification*
  • Bacillaceae / cytology
  • Bacillaceae / isolation & purification*
  • Bacillaceae / physiology
  • Bacterial Typing Techniques
  • Base Composition
  • Carbohydrate Metabolism
  • Catalase / analysis
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Fatty Acids / analysis
  • Fatty Acids / chemistry
  • Genes, rRNA
  • Hot Springs / microbiology*
  • Hydrogen-Ion Concentration
  • Lactic Acid / metabolism
  • Molecular Sequence Data
  • Nitrates / metabolism
  • Nitrites / metabolism
  • Oxidation-Reduction
  • Oxidoreductases / analysis
  • Pacific Ocean
  • Phylogeny
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Seawater / microbiology*
  • Sodium Chloride
  • Spores, Bacterial
  • Temperature

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Nitrates
  • Nitrites
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Lactic Acid
  • Sodium Chloride
  • Oxidoreductases
  • Catalase

Associated data

  • GENBANK/AY818050