Study of the VirE2-ssT-DNA complex formation by scanning probe microscopy and gel electrophoresis- T-complex visualization

Microsc Microanal. 2007 Feb;13(1):51-4. doi: 10.1017/S1431927607070158.

Abstract

The recombinant virulence protein VirE2, capable of forming a complex with single-stranded T-DNA during transfer into plant cells, was isolated, purified, and used for interactions with ssT-DNA. The in vitro interaction of VirE2 and ss-binding protein from Escherichia coli with single-stranded DNA (phage lambda) was determined by agarose gel electrophoresis by the formation of high-molecular-weight complexes after preliminary coincubation of purified protein preparations with ssDNA. We show that VirE2 binds to single-stranded DNA and protects it against nuclease S1 degradation much better than does E. coli SSB protein. We for first time observed the VirE2-ssT-DNA complex by using atomic force microscopy. The complex observed by atomic force microscopy after ssT-DNA and VirE2 protein mixing has a length of about 800 nm and a 5-8 nm width in sites with attached VirE2 protein.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Agrobacterium tumefaciens / metabolism
  • Bacterial Proteins / metabolism*
  • DNA, Single-Stranded / metabolism*
  • DNA-Binding Proteins / metabolism*
  • Electrophoresis / methods*
  • Escherichia coli Proteins / metabolism
  • Ion Channels / metabolism*
  • Microscopy, Scanning Probe / methods*
  • Protein Binding
  • Single-Strand Specific DNA and RNA Endonucleases / metabolism

Substances

  • Bacterial Proteins
  • DNA, Single-Stranded
  • DNA-Binding Proteins
  • Escherichia coli Proteins
  • Ion Channels
  • virE2 protein, Agrobacterium
  • Single-Strand Specific DNA and RNA Endonucleases