Asian populations including Koreans are assumed to have a higher isoflavone intake due to the higher consumption of soybean. However, it is difficult to estimate isoflavone intake because there is no isoflavone database in Korea. In this study, an isoflavone database was established with systematic review. Literature with analytical values of Korean soybeans and its products were collected and evaluated to establish an isoflavone database. A total of 142 food items containing isoflavones were selected among 2,932 food items in the Korean Nutrient Database. Among these, only 25 food items were evaluated with analytical values and the remaining 98 items were replaced with adaptations or calculations from similar items. Dietary intake of isoflavones was assessed for 426 boys and 365 girls aged 8 to 11 years with 3-day food records. The daily mean isoflavone intake was 8.3 mg among boys and 7.2 mg among girls. More than 70% of subjects had a daily isoflavone intake below 10 mg. The most contributory food item to the isoflavone intake among adolescents was tofu in quantity and soybean sauce in frequency. This database could be used to estimate isoflavone intakes from dietary data among various populations and to evaluate the relationships between isoflavone intake and chronic disease.