Peptide-nucleic acid-modified ion-sensitive field-effect transistor-based biosensor for direct detection of DNA hybridization

Anal Chem. 2007 Jan 1;79(1):52-9. doi: 10.1021/ac060273y.

Abstract

Here, we report the development of a peptide-nucleic acid (PNA)-modified ion-sensitive field-effect transistor (IS-FET)-based biosensor that takes advantage of the change in the surface potential upon hybridization of a negatively charged DNA. PNA was immobilized on a silicon nitride gate insulator by an addition reaction between a maleimide group introduced on the gate surface, the succinimide group of N-(6-maleimidocaproyloxy) succinimide, and the thiol group of the terminal cysteine in PNA. The surface was characterized after each step of the reaction by X-ray photoelectron spectroscopy analysis, and the kinetic analysis of the hybridization events was assessed by surface plasmon resonance. In addition, we measured the -potential before and after PNA-DNA hybridization in the presence of counterions to investigate the change in surface charge density at the surface-solution interface within the order of the Debye length. On the basis of the zeta-potential, the surface charge density, DeltaQ, calculated using the Grahame equation was approximately 4.0 x 10(-3) C/m2 and the estimated number of hybridized molecules was at least 1.7 x 10(11)/cm2. The I-V characteristics revealed that the PNA-DNA duplexes induce a positive shift in the threshold voltage, VT, and a decrease in the saturated drain current, ID. These results demonstrate that direct detection of DNA hybridization should be possible using a PNA-modified IS-FET-based biosensor. PNA is particularly advantageous for this system because it enables highly specific and selective binding at low ionic strength.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Binding Sites
  • Biosensing Techniques / instrumentation
  • Biosensing Techniques / methods*
  • Cysteine / chemistry
  • DNA / analysis*
  • DNA / chemistry
  • DNA Probes*
  • Kinetics
  • Maleimides / chemistry
  • Molecular Probe Techniques*
  • Molecular Sequence Data
  • Osmolar Concentration
  • Peptide Nucleic Acids / chemistry*
  • Silicon Compounds / chemistry
  • Spectrometry, X-Ray Emission
  • Succinimides / chemistry
  • Sulfhydryl Compounds / chemistry
  • Surface Plasmon Resonance
  • Surface Properties
  • Transistors, Electronic

Substances

  • DNA Probes
  • Maleimides
  • Peptide Nucleic Acids
  • Silicon Compounds
  • Succinimides
  • Sulfhydryl Compounds
  • DNA
  • Cysteine
  • silicon nitride