Structure of eIF3b RNA recognition motif and its interaction with eIF3j: structural insights into the recruitment of eIF3b to the 40 S ribosomal subunit

J Biol Chem. 2007 Mar 16;282(11):8165-74. doi: 10.1074/jbc.M610860200. Epub 2006 Dec 26.

Abstract

Mammalian eIF3 is a 700-kDa multiprotein complex essential for initiation of protein synthesis in eukaryotic cells. It consists of 13 subunits (eIF3a to -m), among which eIF3b serves as a major scaffolding protein. Here we report the solution structure of the N-terminal RNA recognition motif of human eIF3b (eIF3b-RRM) determined by NMR spectroscopy. The structure reveals a noncanonical RRM with a negatively charged surface in the beta-sheet area contradictory with potential RNA binding activity. Instead, eIF3j, which is required for stable 40 S ribosome binding of the eIF3 complex, specifically binds to the rear alpha-helices of the eIF3b-RRM, opposite to its beta-sheet surface. Moreover, we identify that an N-terminal 69-amino acid peptide of eIF3j is sufficient for binding to eIF3b-RRM and that this interaction is essential for eIF3b-RRM recruitment to the 40 S ribosomal subunit. Our results provide the first structure of an important subdomain of a core eIF3 subunit and detailed insights into protein-protein interactions between two eIF3 subunits required for stable eIF3 recruitment to the 40 S subunit.

MeSH terms

  • Amino Acid Motifs
  • Amino Acid Sequence
  • Eukaryotic Initiation Factor-3 / chemistry*
  • Humans
  • Magnetic Resonance Spectroscopy
  • Molecular Conformation
  • Molecular Sequence Data
  • Peptide Initiation Factors / chemistry
  • Protein Binding
  • Protein Biosynthesis
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Ribosomes / chemistry
  • Sequence Homology, Amino Acid

Substances

  • Eukaryotic Initiation Factor-3
  • Peptide Initiation Factors

Associated data

  • PDB/2NLW