Cryptochrome 3 from Arabidopsis thaliana: structural and functional analysis of its complex with a folate light antenna

J Mol Biol. 2007 Feb 23;366(3):954-64. doi: 10.1016/j.jmb.2006.11.066. Epub 2006 Dec 2.

Abstract

Cryptochromes are almost ubiquitous blue-light receptors and act in several species as central components of the circadian clock. Despite being evolutionary and structurally related with DNA photolyases, a class of light-driven DNA-repair enzymes, and having similar cofactor compositions, cryptochromes lack DNA-repair activity. Cryptochrome 3 from the plant Arabidopsis thaliana belongs to the DASH-type subfamily. Its crystal structure determined at 1.9 Angstroms resolution shows cryptochrome 3 in a dimeric state with the antenna cofactor 5,10-methenyltetrahydrofolate (MTHF) bound in a distance of 15.2 Angstroms to the U-shaped FAD chromophore. Spectroscopic studies on a mutant where a residue crucial for MTHF-binding, E149, was replaced by site-directed mutagenesis demonstrate that MTHF acts in cryptochrome 3 as a functional antenna for the photoreduction of FAD.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alanine
  • Amino Acid Sequence
  • Arabidopsis / metabolism*
  • Arabidopsis Proteins / chemistry*
  • Arabidopsis Proteins / metabolism*
  • Binding Sites
  • Cryptochromes
  • Deoxyribodipyrimidine Photo-Lyase / chemistry*
  • Deoxyribodipyrimidine Photo-Lyase / metabolism*
  • Electrons
  • Flavin-Adenine Dinucleotide / metabolism
  • Folic Acid / analogs & derivatives*
  • Folic Acid / chemistry
  • Folic Acid / metabolism
  • Glutamine
  • Light-Harvesting Protein Complexes / metabolism*
  • Models, Molecular
  • Molecular Sequence Data
  • Mutant Proteins / chemistry
  • Mutant Proteins / metabolism
  • Protein Structure, Secondary
  • Spectrophotometry
  • Static Electricity
  • Structure-Activity Relationship

Substances

  • Arabidopsis Proteins
  • Cryptochromes
  • Light-Harvesting Protein Complexes
  • Mutant Proteins
  • Glutamine
  • Flavin-Adenine Dinucleotide
  • 5,11-methenyltetrahydrohomofolate
  • Folic Acid
  • Cry3 protein, Arabidopsis
  • Deoxyribodipyrimidine Photo-Lyase
  • Alanine

Associated data

  • PDB/2J4D