Kinetics and thermodynamics of G-quadruplexes

Nucleic Acids Symp Ser (Oxf). 2005:(49):61-2. doi: 10.1093/nass/49.1.61.

Abstract

The melting of tetramolecular DNA or RNA quadruplexes is kinetically irreversible. However, rather than being a hindrance, this kinetic inertia allows us to study association and dissociation processes independently. General rules have been extended to longer DNA motifs or sequences containing modified bases such as 8-oxo or 7-deaza guanine. Results were compared with the canonical TG4T and TG5T tetramers: we demonstrate huge differences (up to 10(5)-fold) in the association constants of these quadruplexes depending on primary sequence.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA / chemistry*
  • G-Quadruplexes
  • Guanine / analogs & derivatives
  • Guanine / chemistry*
  • Kinetics
  • Thermodynamics

Substances

  • 8-hydroxyguanine
  • Guanine
  • DNA
  • 7-deazaguanine