Geobacillus toebii subsp. decanicus subsp. nov., a hydrocarbon-degrading, heavy metal resistant bacterium from hot compost

J Gen Appl Microbiol. 2006 Aug;52(4):223-34. doi: 10.2323/jgam.52.223.

Abstract

A thermophilic, spore-forming bacterial strain L1(T) was isolated from hot compost "Pomigliano Environment" s.p.a., Pomigliano, Naples, Italy. The strain was identified by using a polyphasic taxonomic approach. L1(T) resulted in an aerobic, gram-positive, rod-shaped, thermophilic with an optimum growth temperature of 68 degrees C chemorganotrophic bacterium which grew on hydrocarbons as unique carbon and energy sources and was resistant to heavy metals. The G+C DNA content was 43.5 mol%. Phylogenetic analysis of 16S rRNA gene sequence and Random Amplified Polymorphic DNA-PCR (RAPD-PCR) analysis of L1(T) and related strains showed that it forms within Geobacillus toebii, a separate cluster in the Geobacillus genus. The composition of cellular fatty acids analyses by Gas-Mass Spectroscopy differed from that typical for the genus Geobacillus in that it is lacking in iso-C15 fatty acid, while iso-C16 and iso-C17 were predominant. Isolates grew on a rich complex medium at temperatures between 55-75 degrees C and presented a doubling time (t(d)) of 2 h and 6 h using complex media and hydrocarbon media, respectively. Among hydrocarbons tested, n-decane (2%) was the more effective to support the growth (1 g/L of wet cells). The microorganism showed resistance to heavy metal tested during the growth. Furthermore, intracellular alpha-galactosidase and alpha-glucosidase enzymatic activities were detectable in the L1(T) strain. Based on phenotypic, phylogenetic, fatty acid analysis and results from DNA-DNA hybridization, we propose assigning a novel subspecies of Geobacillus toebii, to be named Geobacillus toebii subsp. decanicus subsp. nov., with the type strain L1(T) (=DSM 17041=ATCC BAA 1004).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacillaceae / drug effects*
  • Bacillaceae / genetics
  • Bacillaceae / isolation & purification
  • Bacillaceae / metabolism*
  • Fatty Acids / metabolism
  • Hydrocarbons / metabolism*
  • Metals, Heavy / pharmacology*
  • Phylogeny
  • RNA, Ribosomal, 16S / metabolism
  • Random Amplified Polymorphic DNA Technique / methods
  • Soil Microbiology
  • Soil*

Substances

  • Fatty Acids
  • Hydrocarbons
  • Metals, Heavy
  • RNA, Ribosomal, 16S
  • Soil