Rapid detection and identification of metallo-beta-lactamase-encoding genes by multiplex real-time PCR assay and melt curve analysis

J Clin Microbiol. 2007 Feb;45(2):544-7. doi: 10.1128/JCM.01728-06. Epub 2006 Nov 8.

Abstract

Metallo-beta-lactamase enzymes (MbetaL) are encoded by transferable genes, which appear to spread rapidly among gram-negative bacteria. The objective of this study was to develop a multiplex real-time PCR assay followed by a melt curve step for rapid detection and identification of genes encoding MbetaL-type enzymes based on the amplicon melting peak. The reference sequences of all genes encoding IMP and VIM types, SPM-1, GIM-1, and SIM-1 were downloaded from GenBank, and primers were designed to obtain amplicons showing different sizes and melting peak temperatures (Tm). The real-time PCR assay was able to detect all MbetaL-harboring clinical isolates, and the Tm-assigned genotypes were 100% coincident with previous sequencing results. This assay could be suitable for identification of MbetaL-producing gram-negative bacteria by molecular diagnostic laboratories.

Publication types

  • Evaluation Study

MeSH terms

  • Bacterial Typing Techniques
  • DNA Primers
  • Gram-Negative Bacteria / classification*
  • Gram-Negative Bacteria / enzymology*
  • Gram-Negative Bacteria / genetics
  • Humans
  • Polymerase Chain Reaction / methods*
  • Pseudomonas aeruginosa / classification
  • Pseudomonas aeruginosa / enzymology
  • Pseudomonas aeruginosa / genetics
  • Time Factors
  • Transition Temperature*
  • beta-Lactamases / biosynthesis
  • beta-Lactamases / genetics*

Substances

  • DNA Primers
  • beta-Lactamases