Devosia soli sp. nov., isolated from greenhouse soil in Korea

Int J Syst Evol Microbiol. 2006 Nov;56(Pt 11):2689-2692. doi: 10.1099/ijs.0.64214-0.

Abstract

A Gram-negative, obligately aerobic, rod-shaped bacterium was isolated from greenhouse soil used to cultivate lettuce. The strain, GH2-10T, was characterized on the basis of phenotypic and genotypic data. 16S rRNA gene sequence analysis revealed that the isolate belonged to the genus Devosia, with highest sequence similarity (98.5%) to Devosia riboflavina IFO 13584T. Sequence similarities with other strains tested were below 97.0%. Strain GH2-10T had Q-10 as the predominant ubiquinone and C18:1omega7c and C16:0 as the major fatty acids. The G+C content of the genomic DNA was 59.5 mol%. The results of DNA-DNA hybridization experiments (47% relatedness between D. riboflavina DSM 7230T and strain GH2-10T) and physiological and biochemical tests suggested that strain GH2-10T represents a novel species of the genus Devosia, for which the name Devosia soli sp. nov. is proposed. The type strain is GH2-10T (=KACC 11509T=DSM 17780T).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Carbohydrate Metabolism
  • Caseins / metabolism
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Enzymes / metabolism
  • Fatty Acids / analysis
  • Genes, rRNA
  • Hyphomicrobiaceae / classification*
  • Hyphomicrobiaceae / isolation & purification*
  • Korea
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phylogeny
  • Quinones / analysis
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Soil Microbiology*
  • Starch / metabolism
  • Tyrosine / metabolism

Substances

  • Caseins
  • DNA, Bacterial
  • DNA, Ribosomal
  • Enzymes
  • Fatty Acids
  • Quinones
  • RNA, Ribosomal, 16S
  • Tyrosine
  • Starch

Associated data

  • GENBANK/DQ303125