Solid-phase translation and RNA-protein fusion: a novel approach for folding quality control and direct immobilization of proteins using anchored mRNA

Nucleic Acids Res. 2006;34(20):e140. doi: 10.1093/nar/gkl771. Epub 2006 Oct 24.

Abstract

A novel cell-free translation system is described in which template-mRNA molecules were captured onto solid surfaces to simultaneously synthesize and immobilize proteins in a more native-state form. This technology comprises a novel solid-phase approach to cell-free translation and RNA-protein fusion techniques. A newly constructed biotinylated linker-DNA which enables puromycin-assisted RNA-protein fusion is ligated to the 3' ends of the mRNA molecules to attach the mRNA-template on a streptavidin-coated surface and further to enable the subsequent reactions of translation and RNA-protein fusion on surface. The protein products are therefore directly immobilized onto solid surfaces and furthermore were discovered to adopt a more native state with proper protein folding and superior biological activity compared with conventional liquid-phase approaches. We further validate this approach via the production of immobilized green fluorescent protein (GFP) on microbeads and by the production and assay of aldehyde reductase (ALR) enzyme with 4-fold or more activity. The approach developed in this study may enable to embrace the concept of the transformation of 'RNA chip-to-protein chip' using a solid-phase cell-free translation system and thus to the development of high-throughput microarray platform in the field of functional genomics and in vitro evolution.

Publication types

  • Research Support, Non-U.S. Gov't
  • Validation Study

MeSH terms

  • Aldehyde Reductase / chemistry
  • Aldehyde Reductase / genetics
  • Aldehyde Reductase / metabolism
  • Cell-Free System
  • Directed Molecular Evolution
  • Gene Library
  • Genotype
  • Green Fluorescent Proteins / biosynthesis
  • Green Fluorescent Proteins / chemistry
  • Green Fluorescent Proteins / genetics
  • Phenotype
  • Protein Array Analysis*
  • Protein Biosynthesis*
  • Protein Folding
  • Proteomics
  • Puromycin / chemistry
  • Quality Control
  • RNA, Messenger / chemistry*
  • Templates, Genetic

Substances

  • RNA, Messenger
  • Green Fluorescent Proteins
  • Puromycin
  • Aldehyde Reductase