Direct demonstration of an adaptive constraint

Science. 2006 Oct 20;314(5798):458-61. doi: 10.1126/science.1133479.

Abstract

The role of constraint in adaptive evolution is an open question. Directed evolution of an engineered beta-isopropylmalate dehydrogenase (IMDH), with coenzyme specificity switched from nicotinamide adenine dinucleotide (NAD) to nicotinamide adenine dinucleotide phosphate (NADP), always produces mutants with lower affinities for NADP. This result is the correlated response to selection for relief from inhibition by NADPH (the reduced form of NADP) expected of an adaptive landscape subject to three enzymatic constraints: an upper limit to the rate of maximum turnover (kcat), a correlation in NADP and NADPH affinities, and a trade-off between NAD and NADP usage. Two additional constraints, high intracellular NADPH abundance and the cost of compensatory protein synthesis, have ensured the conserved use of NAD by IMDH throughout evolution. Our results show that selective mechanisms and evolutionary constraints are to be understood in terms of underlying adaptive landscapes.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • 3-Isopropylmalate Dehydrogenase / antagonists & inhibitors
  • 3-Isopropylmalate Dehydrogenase / chemistry
  • 3-Isopropylmalate Dehydrogenase / genetics
  • 3-Isopropylmalate Dehydrogenase / metabolism*
  • Adaptation, Physiological*
  • Amino Acid Substitution
  • Binding Sites
  • Codon
  • Directed Molecular Evolution*
  • Escherichia coli / enzymology*
  • Escherichia coli / growth & development
  • Escherichia coli / physiology
  • Evolution, Molecular*
  • Kinetics
  • Mutation
  • NAD / metabolism
  • NADP / metabolism
  • Phenotype
  • Selection, Genetic

Substances

  • Codon
  • NAD
  • NADP
  • 3-Isopropylmalate Dehydrogenase