Determination of mRNA half-lives in Candida albicans using thiolutin as a transcription inhibitor

Genome. 2006 Aug;49(8):894-9. doi: 10.1139/g06-046.

Abstract

A method for determining mRNA half-lives in the polymorphic fungus Candida albicans is described. It employs growth in a defined medium, the inhibition of transcription with thiolutin (10-20 microg/mL), and quantitative Northern blotting. The method is effective for the A72, SC5314, and CAI-4 strains of C. albicans, and for mRNAs that have a wide variety of decay rates and steady-state abundances. The range of half-lives detected (from 4-168 min) shows that this method is effective for mRNAs with widely varying half-lives. The mRNA decay rates obtained are compared with those for orthologous mRNAs from Saccharomyces cerevisiae. This procedure should work for a broad range of C. albicans strains and can be adapted to other fungal species.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Base Sequence
  • Candida albicans / drug effects
  • Candida albicans / genetics*
  • Candida albicans / growth & development
  • Candida albicans / metabolism*
  • DNA Primers / genetics
  • Half-Life
  • Pyrrolidinones / pharmacology
  • RNA, Fungal / genetics*
  • RNA, Fungal / metabolism*
  • RNA, Messenger / genetics*
  • RNA, Messenger / metabolism*
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism
  • Transcription, Genetic / drug effects

Substances

  • DNA Primers
  • Pyrrolidinones
  • RNA, Fungal
  • RNA, Messenger
  • acetopyrrothine