Translation regulation of intron-containing genes in chloroplasts

J Bioinform Comput Biol. 2006 Aug;4(4):783-92. doi: 10.1142/s0219720006002235.

Abstract

The paper provides a short description of the originally developed algorithm for searching of the conservative protein-RNA binding sites. The algorithm is applied to analyze chloroplast genes. The candidate protein-RNA binding sites were detected upstream of atpF, petB, clpP, psaA, psbA, and psbB genes in many chloroplasts of algae and plants. We suggest that some of these sites are involved in suppressing translation until splicing is completed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Base Sequence
  • Binding Sites
  • Chloroplasts / genetics*
  • Chromosome Mapping / methods*
  • Conserved Sequence / genetics
  • Gene Expression Regulation / genetics
  • Inteins / genetics*
  • Molecular Sequence Data
  • Protein Binding
  • Protein Biosynthesis / genetics*
  • RNA, Messenger / genetics*
  • Sequence Alignment / methods*
  • Sequence Analysis, RNA / methods*

Substances

  • RNA, Messenger