NMR in the SPINE Structural Proteomics project

Acta Crystallogr D Biol Crystallogr. 2006 Oct;62(Pt 10):1150-61. doi: 10.1107/S0907444906032070. Epub 2006 Sep 19.

Abstract

This paper describes the developments, role and contributions of the NMR spectroscopy groups in the Structural Proteomics In Europe (SPINE) consortium. Focusing on the development of high-throughput (HTP) pipelines for NMR structure determinations of proteins, all aspects from sample preparation, data acquisition, data processing, data analysis to structure determination have been improved with respect to sensitivity, automation, speed, robustness and validation. Specific highlights are protonless (13)C-direct detection methods and inferential structure determinations (ISD). In addition to technological improvements, these methods have been applied to deliver over 60 NMR structures of proteins, among which are five that failed to crystallize. The inclusion of NMR spectroscopy in structural proteomics pipelines improves the success rate for protein structure determinations.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Algorithms
  • Data Interpretation, Statistical
  • Magnetic Resonance Spectroscopy / methods*
  • Models, Molecular
  • Proteins / chemistry
  • Proteomics / methods*

Substances

  • Proteins