The Squalius alburnoides complex was produced by hybridization between female S. pyrenaicus (PP genome) and an hypothetical paternal ancestor related with Anaecypris hispanica (AA genome). This study examined a diversity of mating types and found that there is the potential for considerable gene exchange among diploid, triploid and tetraploid hybrids. Using microsatellites, genomes were attributed to Squalius pyrenaicus (P) or reconstituted "nuclear non-hybrid"S. alburnoides (A), and subsequently confirmed in hybrids. Recombination of AA genomes in the "nuclear non-hybrid males" and recombination of the homogametic genomes (AA or PP) after exclusion of the heterogametic genome in triploid females (PAA) were observed by analysing parents and progeny of breeding experiments. Reproduction of tetraploids, generating a symmetric tetraploid genotype (PPAA) in the progeny, suggests a process that could potentially lead to the formation of a new bisexual species. Present results also support: (i) previously hypothesized pathways, in which PPA S. alburnoides females exclude the A genome, exhibit meiotic recombination between the P genomes and generate haploid eggs; (ii) reconstitution of the diploid maternal ancestor genome (PP) as well as of the unknown paternal ancestor (AA); (iii) the occurrence of the same genomic reproductive mechanisms when Anaecypris hispanica is involved; and (iv) the existence of an A. hispanica-like ancestor as the paternal ancestor of S. alburnoides.