Polymerization of fibrin: Direct observation and quantification of individual B:b knob-hole interactions

Blood. 2007 Jan 1;109(1):130-8. doi: 10.1182/blood-2006-07-033910. Epub 2006 Aug 29.

Abstract

The polymerization of fibrin occurs primarily through interactions between N-terminal A- and B-knobs, which are exposed by the cleavage of fibrinopeptides A and B, respectively, and between corresponding a- and b-holes in the gamma- and beta-modules. Of the potential knob-hole interactions--A:a, B:b, A:b, and B:a--the first has been shown to be critical for fibrin formation, but the roles of the others have remained elusive. Using laser tweezers-based force spectroscopy, we observed and quantified individual B:b and A:b interactions. Both desA-fibrin with exposed A-knobs and desB-fibrin bearing B-knobs interacted with fragment D from the gammaD364H fibrinogen containing b-holes but no functional a-holes. The strength of single B:b interactions was found to be 15 to 20 pN, approximately 6-fold weaker than A:a interactions. B:b binding was abrogated by B-knob mimetic peptide, the (beta15-66)2 fragment containing 2 B-knobs, and a monoclonal antibody against the beta15-21 sequence. The interaction of desB-fibrin with fragment D containing a- and b-holes produced the same forces that were insensitive to A-knob mimetic peptide, suggesting that B:a interactions were absent. These results directly demonstrate for the first time B:b binding mediated by natural B-knobs exposed in a fibrin monomer.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs
  • Amino Acid Substitution
  • Fibrin / chemistry*
  • Fibrin Fibrinogen Degradation Products / chemistry
  • Fibrinogen / chemistry
  • Fibrinogen / pharmacology
  • Humans
  • Models, Molecular
  • Mutation, Missense
  • Oligopeptides / chemistry
  • Oligopeptides / pharmacology
  • Optical Tweezers
  • Peptide Fragments / chemistry
  • Peptide Fragments / pharmacology
  • Point Mutation
  • Protein Binding
  • Protein Conformation
  • Protein Interaction Mapping*
  • Protein Structure, Tertiary
  • Recombinant Fusion Proteins / chemistry
  • Thrombin / metabolism

Substances

  • BBeta fibrinogen
  • Fibrin Fibrinogen Degradation Products
  • Oligopeptides
  • Peptide Fragments
  • Recombinant Fusion Proteins
  • fibrinogen Aalpha
  • fibrinogen D fragment
  • glycyl-histidyl-arginyl-proline
  • glycyl-prolyl-arginyl-proline
  • Fibrin
  • Fibrinogen
  • Thrombin