Ethylene biosynthesis by 1-aminocyclopropane-1-carboxylic acid oxidase: a DFT study

Chemistry. 2006 Nov 24;12(34):8835-46. doi: 10.1002/chem.200501459.

Abstract

The reaction catalyzed by the plant enzyme 1-aminocyclopropane-1-carboxylic acid oxidase (ACCO) was investigated by using hybrid density functional theory. ACCO belongs to the non-heme iron(II) enzyme superfamily and carries out the bicarbonate-dependent two-electron oxidation of its substrate ACC (1-aminocyclopropane-1-carboxylic acid) concomitant with the reduction of dioxygen and oxidation of a reducing agent probably ascorbate. The reaction gives ethylene, CO(2), cyanide and two water molecules. A model including the mononuclear iron complex with ACC in the first coordination sphere was used to study the details of O-O bond cleavage and cyclopropane ring opening. Calculations imply that this unusual and complex reaction is triggered by a hydrogen atom abstraction step generating a radical on the amino nitrogen of ACC. Subsequently, cyclopropane ring opening followed by O-O bond heterolysis leads to a very reactive iron(IV)-oxo intermediate, which decomposes to ethylene and cyanoformate with very low energy barriers. The reaction is assisted by bicarbonate located in the second coordination sphere of the metal.

MeSH terms

  • Amino Acid Oxidoreductases / chemistry
  • Amino Acid Oxidoreductases / metabolism*
  • Bicarbonates / chemistry
  • Bicarbonates / metabolism
  • Binding Sites
  • Carbon Dioxide / chemistry
  • Carbon Dioxide / metabolism
  • Catalysis
  • Cyanides / chemistry
  • Cyanides / metabolism
  • Cyclopropanes / chemistry
  • Ethylenes / biosynthesis*
  • Hydrogen / chemistry
  • Iron / chemistry
  • Iron / metabolism
  • Mathematics
  • Molecular Conformation
  • Nitrogen / chemistry
  • Oxidation-Reduction
  • Oxygen / chemistry
  • Water / chemistry
  • Water / metabolism

Substances

  • Bicarbonates
  • Cyanides
  • Cyclopropanes
  • Ethylenes
  • Water
  • Carbon Dioxide
  • Hydrogen
  • cyclopropane
  • Iron
  • Amino Acid Oxidoreductases
  • 1-aminocyclopropane-1-carboxylic acid oxidase
  • Nitrogen
  • Oxygen