Double dative bond configuration: pyrimidine on Ge(100)

J Phys Chem B. 2005 Jan 13;109(1):348-51. doi: 10.1021/jp046947v.

Abstract

The adsorption of pyrimidine onto Ge(100) surfaces has been investigated using real-time scanning tunneling microscopy (STM), temperature-programmed desorption (TPD), and density-functional theory (DFT) calculations. Our results show that the adsorbed pyrimidine molecules are tilted about 40 degrees with respect to the Ge surface, and through a Lewis acid-base reaction form bridges between the down-Ge atoms of neighboring Ge dimer rows by double Ge-N dative bonding without loss of aromaticity. For coverages of pyrimidine up to 0.25 ML, a well-ordered c(4x2) structure results from states that appear in STM micrographs as oval-shaped protrusions, which correspond to pyrimidine molecules datively adsorbed on every other dimer. However, above 0.25 ML, the oval-shaped protrusions gradually change into brighter zigzag lines. At 0.50 ML, a p(2x2) structure results from the states that appear in STM as zigzag lines. The zigzag lines are formed by the attachment of pyrimidine molecules to the down-Ge atoms of every Ge dimer. However, the unstable p(2x2) structure eventually reconstructs into a c(4x2) structure due to steric hindrance between the adsorbed pyrimidine molecules after stopping the exposure of pyrimidine to the surface.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adsorption
  • Germanium / chemistry*
  • Microscopy, Scanning Tunneling
  • Models, Chemical
  • Particle Size
  • Pyrimidines / chemistry*
  • Sensitivity and Specificity
  • Surface Properties
  • Temperature

Substances

  • Pyrimidines
  • Germanium
  • pyrimidine