Identification of specific gene expression profiles in fibroblasts derived from middle ear cholesteatoma

Arch Otolaryngol Head Neck Surg. 2006 Jul;132(7):734-42. doi: 10.1001/archotol.132.7.734.

Abstract

Objective: To investigate the role of fibroblasts in the pathogenesis of cholesteatoma.

Design: Tissue specimens were obtained from our patients. Middle ear cholesteatoma-derived fibroblasts (MECFs) and postauricular skin-derived fibroblasts (SFs) as controls were then cultured for a few weeks. These fibroblasts were stimulated with interleukin (IL) 1alpha and/or IL-1beta before gene expression assays. We used the human genome U133A probe array (GeneChip) and real-time polymerase chain reaction to examine and compare the gene expression profiles of the MECFs and SFs.

Subjects: Six patients who had undergone tympanoplasty.

Results: The IL-1alpha-regulated genes were classified into 4 distinct clusters on the basis of profiles differentially regulated by SF and MECF using a hierarchical clustering analysis. The messenger RNA expressions of LARC (liver and activation-regulated chemokine), GMCSF (granulocyte-macrophage colony-stimulating factor), epiregulin, ICAM1 (intercellular adhesion molecule 1), and TGFA (transforming growth factor alpha) were more strongly up-regulated by IL-1alpha and/or IL-1beta in MECF than in SF, suggesting that these fibroblasts derived from different tissues retained their typical gene expression profiles.

Conclusions: Fibroblasts may play a role in hyperkeratosis of middle ear cholesteatoma by releasing molecules involved in inflammation and epidermal growth. These fibroblasts may retain tissue-specific characteristics presumably controlled by epigenetic mechanisms.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cholesteatoma, Middle Ear / genetics*
  • Fibroblasts / metabolism*
  • Gene Expression Profiling*
  • Humans
  • Interleukin-1 / pharmacology
  • RNA, Messenger / genetics
  • Reverse Transcriptase Polymerase Chain Reaction

Substances

  • Interleukin-1
  • RNA, Messenger