Sequence analysis of the Choristoneura occidentalis granulovirus genome

J Gen Virol. 2006 Jul;87(Pt 7):1917-1933. doi: 10.1099/vir.0.81792-0.

Abstract

The genome of the Choristoneura occidentalis granulovirus (ChocGV) isolated from the western spruce budworm, Choristoneura occidentalis, was sequenced completely. It was 104,710 bp long, with a 67.3% A+T content and contained 116 potential open reading frames (ORFs) covering 88.4% of the genome. Of these, 29 ORFs were conserved in all fully sequenced baculovirus genomes, 30 were GV-specific, 53 were present in some nucleopolyhedroviruses (NPVs) and/or GVs, three were common to ChocGV and Choristoneura fumiferana GV (ChfuGV) and one was so far unique. To date, ChocGV is the only GV identified that contains a homologue of the apoptosis inhibitor protein P35/P49, present in some group I NPVs. It is also the first GV without a Xestia c-nigrum GV ORF 26 homologue. Five homologous regions (hrs)/repeat regions, lacking typical NPV hr palindromes were identified. ChocGV hrs were similar to each other but not to other GV hrs. A 1.8 kb repeat region with a high A+T content (81%) and multiple repeats of 21-210 bp was found between choc36 and 37. This area resembled the non-homologous region origin of DNA replication (non-hr ori) identified in Cryptophlebia leucotreta GV (CrleGV) and Cydia pomonella GV (CpGV). Based on the mean amino acid identities of homologous proteins, ChocGV was closest to fully sequenced genomes CpGV (52.3%) and CrleGV (52.1%). The closest amino acid identity was to individual ORFs from the partially sequenced ChfuGV genome (97.2% in 38 ORFs). Phylogenetic analysis placed ChocGV in a clade with CrleGV and CpGV.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Apoptosis
  • Baculoviridae / genetics
  • Base Composition
  • Base Sequence
  • DNA, Viral / chemistry
  • DNA, Viral / genetics
  • Genome, Viral*
  • Granulovirus / genetics*
  • Granulovirus / physiology
  • Molecular Sequence Data
  • Moths / virology*
  • Open Reading Frames
  • Phylogeny
  • Protein Biosynthesis
  • Sequence Homology, Amino Acid
  • Sequence Homology, Nucleic Acid
  • Viral Proteins / genetics
  • Virus Replication

Substances

  • DNA, Viral
  • Viral Proteins

Associated data

  • GENBANK/DQ333351