Conformational changes during apoplastocyanin folding observed by photocleavable modification and transient grating

J Am Chem Soc. 2006 Jun 14;128(23):7551-8. doi: 10.1021/ja058788e.

Abstract

A new method to investigate the initial protein folding dynamics is developed based on a pulsed laser light triggering method and a unique transient grating method. The side chain of the cysteine residue of apoplastocyanin (apoPC) was site-specifically modified with a 4,5-dimethoxy-2-nitrobenzyl derivative, where the CD and 2D NMR spectra showed that the modified apoPC was unfolded. The substituent was cleaved with a rate of about 400 ns by photoirradiation, which was monitored by the disappearance of the absorption band at 355 nm and the increase in the transient grating signal. After a sufficient time from the photocleavage reaction, the CD and NMR spectra showed that the native beta-sheet structure was recovered. Protein folding dynamics was monitored in the time domain with the transient grating method from a viewpoint of the molecular volume change and the diffusion coefficient, both of which reflect the global structural change, including the protein-water interaction. The observed volume decrease of apoPC with a time scale of 270 micros is ascribed to the initial hydrophobic collapse. The increase in the diffusion coefficient (23 ms) is considered to indicate a change from an intermolecular to an intramolecular hydrogen bonding network. The initial folding process of apoPC is discussed based on these observations.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Apoproteins / chemistry*
  • Circular Dichroism
  • Cysteine / chemistry
  • Diffusion
  • Hydrogen Bonding
  • Hydrophobic and Hydrophilic Interactions
  • Lasers
  • Light*
  • Magnetic Resonance Spectroscopy
  • Nitrobenzenes / chemistry
  • Plastocyanin / chemistry*
  • Protein Conformation / radiation effects*
  • Protein Folding*
  • Protein Structure, Secondary / radiation effects*
  • Water / chemistry

Substances

  • Apoproteins
  • Nitrobenzenes
  • apoplastocyanin
  • Water
  • Plastocyanin
  • Cysteine