Highly discriminatory binding of capsid-cementing proteins in bacteriophage L

Structure. 2006 May;14(5):837-45. doi: 10.1016/j.str.2006.03.010.

Abstract

Cementing proteins that bind to the virion surface have been described in double-stranded DNA viruses such as herpesvirus, adenovirus, and numerous bacteriophages. The three-dimensional structure of bacteriophage L determined by electron cryo-microscopy reveals binding modes of two cementing proteins-one, called Dec, encoded by phage gene orf134 and the other by an as yet unidentified gene. These two proteins form homotrimers and bind at the quasi 3-fold axes nearest the icosahedral 2-fold axes and at the icosahedral 3-fold vertices, respectively. They do not bind at the quasi 3-fold axes near the icosahedral 5-fold vertices. These observations indicate precise recognition of the two cementing proteins at a subset of the quasi equivalent sites on the phage capsid. Sequence analysis shows striking similarity between the C-terminal portion of phage L Dec protein and five regions in the long tail fiber of a T4-like phage, suggesting functional parallelism between them.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Bacteriophage P22 / chemistry
  • Bacteriophage P22 / ultrastructure
  • Capsid Proteins / chemistry*
  • Cryoelectron Microscopy
  • Crystallography, X-Ray
  • Molecular Sequence Data
  • Protein Conformation
  • Protein Folding
  • Salmonella Phages / chemistry*
  • Salmonella Phages / ultrastructure*

Substances

  • Capsid Proteins