Biomimetic facially amphiphilic antibacterial oligomers with conformationally stiff backbones

Chem Biol. 2006 Apr;13(4):427-35. doi: 10.1016/j.chembiol.2006.02.007.

Abstract

A foldamer has been designed with a conformationally stiff backbone that is facially amphiphilic. The oligomer has excellent antimicrobial activity and was found to be 18 times more active toward bacterial cells than human red blood cells. The oligomer is built from arylamide bonds around a central 4,6-dicarboxy pyrimidine ring. The conformation was studied by X-ray crystallography and solution NMR spectroscopy. Density-functional (DFT) calculations were performed to guide the design. These calculations accurately predicted the overall conformation as well as NMR chemical shifts. Antibacterial activity was demonstrated against E. coli, a gram-negative strain, and B. subtilis, a gram-positive strain. The minimal inhibitory concentration is 0.8 microg/ml.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Anti-Bacterial Agents / chemical synthesis
  • Anti-Bacterial Agents / chemistry*
  • Anti-Bacterial Agents / pharmacology*
  • Bacillus subtilis / drug effects
  • Crystallography, X-Ray
  • Drug Design
  • Escherichia coli / drug effects
  • Hemolysis / drug effects
  • Humans
  • In Vitro Techniques
  • Models, Molecular
  • Molecular Conformation
  • Molecular Mimicry
  • Molecular Structure

Substances

  • Anti-Bacterial Agents