Cloning, purification and crystallization of Thermus thermophilus proline dehydrogenase

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Aug 1;61(Pt 8):737-9. doi: 10.1107/S1744309105019779. Epub 2005 Jul 8.

Abstract

Nature recycles L-proline by converting it to L-glutamate. This four-electron oxidation process is catalyzed by the two enzymes: proline dehydrogenase (PRODH) and Delta1-pyrroline-5-carboxylate dehydrogenase. This note reports the cloning, purification and crystallization of Thermus thermophilus PRODH, which is the prototype of a newly discovered superfamily of bacterial monofunctional PRODHs. The results presented here include production of a monodisperse protein solution through use of the detergent n-octyl beta-D-glucopyranoside and the growth of native crystals that diffracted to 2.3 A resolution at Advanced Light Source beamline 4.2.2. The space group is P2(1)2(1)2(1), with unit-cell parameters a = 82.2, b = 89.6, c = 94.3 A. The asymmetric unit is predicted to contain two protein molecules and 46% solvent. Molecular-replacement trials using a fragment of the PRODH domain of the multifunctional Escherichia coli PutA protein as the search model (24% amino-acid sequence identity) did not produce a satisfactory solution. Therefore, the structure of T. thermophilus PRODH will be determined by multiwavelength anomalous dispersion phasing using a selenomethionyl derivative.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Cloning, Molecular
  • Crystallization
  • Proline Oxidase / chemistry*
  • Proline Oxidase / genetics
  • Proline Oxidase / isolation & purification*
  • Thermus thermophilus / enzymology*
  • Thermus thermophilus / genetics*

Substances

  • Proline Oxidase