Comparison of human (and other) genome browsers

Hum Genomics. 2006 Jan;2(4):266-70. doi: 10.1186/1479-7364-2-4-266.

Abstract

The sequence of the human genome provides a scaffold on which numerous annotations, such the locations of genes, can be laid. Genome browsers have been created to allow the simultaneous display of multiple annotations within a graphical interface. In addition, they provide the ability to search for markers and sequences, to extract annotations for specific regions or for the whole genome and to act as a central starting point for genomic research. This review describes the basic functionality of genome browsers and compares three of them: the University of California Santa Cruz (UCSC) Genome Browser, the Ensembl Genome Browser and the NCBI MapViewer.

Publication types

  • Comparative Study
  • Review

MeSH terms

  • Animals
  • Base Sequence
  • DNA / genetics
  • Databases, Nucleic Acid
  • Genetic Markers
  • Genetic Variation
  • Genome
  • Genome, Human*
  • Humans
  • Software*

Substances

  • Genetic Markers
  • DNA