Identification of the region responsible for fibril formation in the CAD domain of caspase-activated DNase

J Biochem. 2005 Dec;138(6):815-9. doi: 10.1093/jb/mvi183.

Abstract

Caspase-activated DNase (CAD) has a compact domain at its N-terminus (CAD domain, 87 amino acid residues), which comprises one alpha-helix and five beta-strands forming a single sheet. The CAD domain of CAD (CAD-CD) forms amyloid fibrils containing alpha-helix at low pH in the presence of salt. To obtain insights into the mechanism of amyloid fibril formation, we identified the peptide region essential for fibril formation of CAD-CD and the region responsible for the salt requirement. We searched for these regions by constructing a series of deletion and point mutants of CAD-CD. Fibril formation by these CAD-CD mutants was examined by fluorescence analysis of thioflavin T and transmission electron microscopy. C-Terminal deletion and point mutation studies revealed that an aromatic residue near the C-terminus (Trp81) is critical for fibril formation. In addition, the main chain conformation of the beta5 strand, which forms a hydrophobic core with Trp81, was found to be important for the fibril formation by CAD-CD. The N-terminal 30 amino acid region containing two beta-strands was not essential for fibril formation. Rather, the N-terminal region was found to be responsible for the requirement of salt for fibril formation.

MeSH terms

  • Amyloid / biosynthesis*
  • Deoxyribonucleases / chemistry*
  • Deoxyribonucleases / genetics
  • Humans
  • Point Mutation
  • Protein Structure, Tertiary
  • Salts
  • Sodium Chloride

Substances

  • Amyloid
  • Salts
  • Sodium Chloride
  • Deoxyribonucleases
  • caspase-activated deoxyribonuclease