Investigating oligonucleotide hybridization at subnanomolar level by surface plasmon resonance biosensor method

Biopolymers. 2006 Jul;82(4):394-8. doi: 10.1002/bip.20433.

Abstract

We have optimized surface plasmon resonance (SPR) biosensor technology for a rapid, direct, and low-consumption label-free multianalyte screening of synthetic oligonucleotides (ONs) with modified internucleotide linkages potentially applicable in antisense therapy. Monitoring of the ONs hybridization is based on the formation of complex between the natural oligonucleotide probe immobilized on the sensor surface and the ON in solution in contact with the sensor surface. An immobilization chemistry utilizing the streptavidin-biotin interaction was employed to obtain desired ligand density and high hybridization efficiency. It was demonstrated that the sensor is capable of detecting complementary 23-mer ONs in concentrations as low as 0.1 nM with high specificity and reproducibility.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biosensing Techniques / instrumentation
  • Biosensing Techniques / methods*
  • Nanotechnology / instrumentation
  • Nanotechnology / methods
  • Nucleic Acid Hybridization / methods*
  • Oligonucleotide Array Sequence Analysis / instrumentation
  • Oligonucleotide Array Sequence Analysis / methods
  • Oligonucleotide Probes / chemistry
  • Oligonucleotide Probes / genetics
  • Surface Plasmon Resonance / methods*

Substances

  • Oligonucleotide Probes