Solid-state NMR analysis of the PGLa peptide orientation in DMPC bilayers: structural fidelity of 2H-labels versus high sensitivity of 19F-NMR

Biophys J. 2006 Mar 1;90(5):1676-86. doi: 10.1529/biophysj.105.073858. Epub 2005 Dec 9.

Abstract

The structure and alignment of the amphipathic alpha-helical antimicrobial peptide PGLa in a lipid membrane is determined with high accuracy by solid-state 2H-NMR. Orientational constraints are derived from a series of eight alanine-3,3,3-d3-labeled peptides, in which either a native alanine is nonperturbingly labeled (4x), or a glycine (2x) or isoleucine (2x) is selectively replaced. The concentration dependent realignment of the alpha-helix from the surface-bound "S-state" to a tilted "T-state" by 30 degrees is precisely calculated using the quadrupole splittings of the four nonperturbing labels as constraints. The remaining, potentially perturbing alanine-3,3,3-d3 labels show only minor deviations from the unperturbed peptide structure and help to single out the unique solution. Comparison with previous 19F-NMR constraints from 4-CF3-phenylglycine labels shows that the structure and orientation of the PGLa peptide is not much disturbed even by these bulky nonnatural side chains, which contain CF3 groups that offer a 20-fold better NMR sensitivity than CD3 groups.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antimicrobial Cationic Peptides / chemistry*
  • Deuterium / chemistry*
  • Dimyristoylphosphatidylcholine / analysis
  • Dimyristoylphosphatidylcholine / chemistry*
  • Fluorine / chemistry*
  • Lipid Bilayers / analysis
  • Lipid Bilayers / chemistry*
  • Magnetic Resonance Spectroscopy / methods*
  • Membrane Fluidity*
  • Membrane Proteins / chemistry
  • Protein Conformation
  • Reproducibility of Results
  • Sensitivity and Specificity

Substances

  • Antimicrobial Cationic Peptides
  • Lipid Bilayers
  • Membrane Proteins
  • peptide-Gly-Leu-amide
  • Fluorine
  • Deuterium
  • Dimyristoylphosphatidylcholine