Aliphatic amidase from Rhodococcus rhodochrous M8 is related to the nitrilase/cyanide hydratase family

Biochemistry (Mosc). 2005 Nov;70(11):1280-7. doi: 10.1007/s10541-005-0260-7.

Abstract

A comparative study of amino acid sequence and physicochemical properties indicates the affiliation of an amidase from Rhodococcus rhodochrous M8 (EC 3.5.1.4) to the nitrilase/cyanide hydratase family. Cluster analysis and multiple alignments show that Cys166 is an active site nucleophile. The enzyme has been shown to be a typical aliphatic amidase, being the most active toward short-chain linear amides. Small polar molecules such as hydroxylamine and O-methyl hydroxylamine can serve as effective external nucleophiles in acyl transfer reactions. The kinetics of the industrially important amidase-catalyzed acrylamide hydrolysis has been studied over a wide range of substrate concentrations; inhibition during enzymatic hydrolysis by the substrate and product (acrylic acid) has been observed; an adequate kinetic scheme has been evaluated and the corresponding kinetic parameters have been determined.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amidohydrolases / metabolism*
  • Amino Acid Sequence
  • Aminohydrolases / metabolism*
  • Chromatography, High Pressure Liquid
  • Hydro-Lyases / metabolism*
  • Molecular Sequence Data
  • Rhodococcus / enzymology*
  • Sequence Homology, Amino Acid
  • Spectrophotometry, Ultraviolet
  • Substrate Specificity

Substances

  • Amidohydrolases
  • amidase
  • Aminohydrolases
  • nitrilase
  • Hydro-Lyases
  • cyanide hydratase