Interaction of the regulatory protein NicR1 with the promoter region of the pAO1-encoded 6-hydroxy-D-nicotine oxidase gene of Arthrobacter oxidans

Mol Microbiol. 1992 Jul;6(13):1809-20. doi: 10.1111/j.1365-2958.1992.tb01353.x.

Abstract

The D,L-nicotine catabolism of the Gram-positive soil bacterium Arthrobacter oxidans is linked to the presence within the cells of the 160 kb catabolic plasmid pAO1. pAO1-cured cells lost the catabolic enzymes and reintroduction of pAO1 by electroporation into cured cells reestablished the nic+ phenotype. DNA band shift assays with extracts from cured and pAO1+ cells suggested that pAO1 encodes the regulatory protein NicR1. Footprint analysis revealed that two homologous palindromes (IR1 and IR2), present in the 5'-regulatory region of the 6-HDNO gene, were protected from DNase I digestion. Binding of NicR1 to the palindromes is symmetrical, co-operative, and stronger to IR1 containing the 6-HDNO gene promoter than to IR2. Site-directed mutagenesis revealed that steric constraints and sequence requirements for NicR1-binding are located exclusively in the palindromic sequences. Deletions and insertions in the interpalindromic region and in the 6-HDNO promoter -10 sequence had no effect on the binding characteristics of NicR1 to the 6-HDNO regulatory region. Acting as a repressor, NicR1 prevents binding of the E. coli RNA-polymerase to the consensus sigma 70 promoter in vitro. However, the interaction of NicR1 with the 6-HDNO promoter region in extracts of nicotine-induced cells from various growth stages did not differ from that observed with extracts of nicotine-uninduced cells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arthrobacter / enzymology
  • Arthrobacter / genetics*
  • Bacterial Proteins / metabolism*
  • Base Sequence
  • Genes, Bacterial
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Nicotine / metabolism*
  • Oxidoreductases / genetics*
  • Plasmids
  • Promoter Regions, Genetic*
  • Repressor Proteins / metabolism*
  • Sigma Factor / metabolism
  • Transformation, Bacterial

Substances

  • Bacterial Proteins
  • Repressor Proteins
  • Sigma Factor
  • Nicotine
  • Oxidoreductases
  • 6-hydroxy-D-nicotine oxidase