Bipartite signal for read-through suppression in murine leukemia virus mRNA: an eight-nucleotide purine-rich sequence immediately downstream of the gag termination codon followed by an RNA pseudoknot

J Virol. 1992 Aug;66(8):5127-32. doi: 10.1128/JVI.66.8.5127-5132.1992.

Abstract

The pol gene of murine leukemia virus and other mammalian type C retroviruses is expressed by read-through suppression of an in-frame UAG codon which separates the gag and pol coding regions. In this study, we have analyzed the sequence requirements for read-through suppression by placing different portions of wild-type and mutant viral sequences from the gag-pol junction between reporter genes and testing transcripts of these constructs for suppression in reticulocyte lysates. We find that the read-through signal is contained within the first 57 nucleotides on the 3' side of the UAG codon. Our results indicate that the identities of six conserved bases in the eight-nucleotide, purine-rich sequence immediately downstream of the UAG codon are critical for suppression, as is the existence of a pseudoknot structure spanning the next 49 nucleotides. Thus, read-through suppression depends on a complex, bipartite signal in the mRNA.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Base Sequence
  • Cloning, Molecular
  • Codon / genetics
  • Fusion Proteins, gag-pol / genetics
  • Genes, gag*
  • Genes, pol
  • Molecular Sequence Data
  • Moloney murine leukemia virus / genetics*
  • Mutagenesis, Site-Directed
  • Nucleic Acid Conformation
  • RNA, Messenger / genetics*
  • RNA, Viral / genetics*
  • Reticulocytes / metabolism
  • Signal Transduction
  • Suppression, Genetic*
  • Terminator Regions, Genetic*
  • Transcription, Genetic

Substances

  • Codon
  • Fusion Proteins, gag-pol
  • RNA, Messenger
  • RNA, Viral