The present paper details our findings following immunohistochemical examination of the midbrain and pons of the Highveld molerat (Cryptomys hottentotus) using antibodies for vesicular acetylcholine transporter (cholinergic neurons), tyrosine hydroxylase (dopaminergic and noradrenergic neurons), and serotonin (serotonergic neurons). The aim was to see if, in this microphthalmic rodent that lacks a distinct circadian rhythm, the nuclei involved in aspects of visual processing and the sleep-wake cycle exhibited specific loss or morphological alteration. For all of the neural systems investigated we found nuclei that can be considered direct homologues of those found in the laboratory rat. There was no specific loss of any nuclear group of any of the systems investigated, but there was significant reduction (as judged qualitatively) in the number of neurons in the visual associated nuclei. The fact that we could identify all nuclear groupings from three systems in this species is suggestive of an evolutionary constraint acting at the level of the organization of the neural system.