Methylosarcina lacus sp. nov., a methanotroph from Lake Washington, Seattle, USA, and emended description of the genus Methylosarcina

Int J Syst Evol Microbiol. 2005 Nov;55(Pt 6):2345-2350. doi: 10.1099/ijs.0.63405-0.

Abstract

An obligately methanotrophic bacterial strain, LW14T, isolated from the sediment of Lake Washington, Seattle, USA, is described taxonomically. The isolate is an aerobic, Gram-negative, non-motile bacterium capable of growth on methane, and possesses type I intracytoplasmic membranes (i.e. it is a type I methanotroph). The strain possesses particulate methane monooxygenase (MMO) and has no soluble MMO. Formaldehyde is assimilated via the ribulose monophosphate cycle. The isolate grows within a pH range of 4-8, with the optimum between pH 5.5 and 6.5. The cellular fatty acid profile is dominated by C(16 : )omega18c, C(16 : 1)omega7c and C(16 : 1)omega5t fatty acids. The DNA G+C content is 53.3+/-0.4 mol%. On the basis of sequence analysis of the 16S rRNA gene, isolate LW14T is related most closely to representatives of the genus Methylosarcina. However, DNA-DNA hybridization analysis reveals only a distant relationship between isolate LW14T and the previously described Methylosarcina species. On the basis of its phenotypic and genotypic characteristics, LW14T represents a novel species of the genus Methylosarcina, for which the name Methylosarcina lacus sp. nov. is proposed, with LW14T (=ATCC BAA-1047T=JCM 13284T) as the type strain.

MeSH terms

  • Base Composition
  • DNA, Ribosomal / genetics
  • Environmental Microbiology
  • Fatty Acids / analysis
  • Fresh Water / microbiology*
  • Methane / metabolism*
  • Methylococcaceae / classification*
  • Methylococcaceae / genetics
  • Methylococcaceae / metabolism
  • Methylococcaceae / ultrastructure
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Oxygenases / genetics
  • RNA, Ribosomal, 16S / analysis
  • RNA, Ribosomal, 16S / genetics
  • United States
  • Water Microbiology

Substances

  • DNA, Ribosomal
  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Oxygenases
  • methane monooxygenase
  • Methane

Associated data

  • GENBANK/AY007296