A BAC library of the East African haplochromine cichlid fish Astatotilapia burtoni

J Exp Zool B Mol Dev Evol. 2006 Jan 15;306(1):35-44. doi: 10.1002/jez.b.21068.

Abstract

A BAC library was constructed from Astatotilapia burtoni, a haplochromine cichlid that is found in Lake Tanganyika, East Africa, and its surrounding rivers. The library was generated from genomic DNA of blood cells and comprises 96,768 individual clones. Its median insert size is 150 kb and the coverage is expected to represent about 14 genome equivalents. The coverage evaluation was based on genome size estimates that were obtained by flow cytometry. In addition, hybridization screens with five probes largely corroborate the above coverage estimate, although the number of clones ranged from 5 to 22 authenticated clones per single copy probe. The BAC library described here is expected to be useful to the scientific community interested in cichlid genomics as an important resource to gain new insights into the rapid evolution of the great species diversity of haplochromine cichlid fishes.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Africa, Eastern
  • Animals
  • Chromosomes, Artificial, Bacterial*
  • Cichlids / genetics*
  • Cluster Analysis
  • DNA Primers
  • Flow Cytometry
  • Gene Library*
  • Phylogeny*
  • Species Specificity

Substances

  • DNA Primers