Synthesis and in vitro anti-HCV activity of beta-D- and 1-2'-deoxy-2'-fluororibonucleosides

Nucleosides Nucleotides Nucleic Acids. 2005;24(5-7):875-9. doi: 10.1081/ncn-200059224.

Abstract

Based on the discovery of beta-D-2'-deoxy-2'-fluorocytidine as a potent anti-hepatitis C virus (HCV) agent, a series of beta-D- and L-2'-deoxy-2'-fluoroibonucleosides with modifications at 5 and/or 4 positions were synthesized and evaluated for their in vitro activity against HCV and bovine viral diarrhea virus (BVDV). The introduction of the 2'-fluoro group was achieved by either fluorination of 2,2'-anhydronucleosides with hydrogen fluoride-pyridine or potassium fluoride, or a fluorination of arabinonucleosides with DAST. Among the 27 analogues synthesized, only the 5-fluoro compounds, namely beta-D-2'-deoxy-2',5-difluorocytidine (5), had anti-HCV activity in the subgenomic HCV replicon cell line, and inhibitory activity against ribosomal RNA. As beta-D-N4-hydroxycytidine (NHC) had previously shown potent anti-HCV activity, the two functionalities of the N4-hydroxyl and the 2'-fluoro were combined into one molecule, yielding beta-D-2'-deoxy-2'-fluoro-N4-hydroxycytidine (12). However, this nucleoside showed neither anti-HCV activity nor toxicity. All the L-forms of the analogues were devoid of anti-HCV activity. None of the compounds showed anti-BVDV activity, suggesting that the BVDV system cannot reliably predict anti-HCV activity in vitro.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Antiviral Agents / pharmacology*
  • Cattle
  • Cell Line
  • Chemistry, Pharmaceutical / methods
  • Deoxycytidine / analogs & derivatives*
  • Deoxycytidine / chemical synthesis
  • Deoxycytidine / pharmacology
  • Diarrhea Viruses, Bovine Viral / metabolism
  • Drug Design
  • Fluorides / pharmacology
  • Fluorine / chemistry*
  • Hepacivirus / metabolism*
  • Humans
  • Hydrofluoric Acid / chemistry
  • In Vitro Techniques
  • Liver / drug effects
  • Liver / virology
  • Models, Chemical
  • Molecular Biology / methods
  • Potassium Compounds / pharmacology
  • Pyrimidine Nucleosides / chemistry
  • RNA / chemistry
  • RNA, Ribosomal / chemistry
  • Ribonucleosides / chemistry*
  • Ribonucleosides / pharmacology
  • Stereoisomerism

Substances

  • Antiviral Agents
  • Potassium Compounds
  • Pyrimidine Nucleosides
  • RNA, Ribosomal
  • Ribonucleosides
  • Deoxycytidine
  • Fluorine
  • RNA
  • potassium fluoride
  • Fluorides
  • Hydrofluoric Acid