Crystal structure of truncated Fibrobacter succinogenes 1,3-1,4-beta-D-glucanase in complex with beta-1,3-1,4-cellotriose

J Mol Biol. 2005 Dec 2;354(3):642-51. doi: 10.1016/j.jmb.2005.09.041. Epub 2005 Sep 30.

Abstract

Fibrobacter succinogenes 1,3-1,4-beta-D-glucanase (Fsbeta-glucanase) catalyzes the specific hydrolysis of beta-1,4 glycosidic bonds adjacent to beta-1,3 linkages in beta-D-glucans or lichenan. This is the first report to elucidate the crystal structure of a truncated Fsbeta-glucanase (TFsbeta-glucanase) in complex with beta-1,3-1,4-cellotriose, a major product of the enzyme reaction. The crystal structures, at a resolution of 2.3 angstroms, reveal that the overall fold of TFsbeta-glucanase remains virtually unchanged upon sugar binding. The enzyme accommodates five glucose residues, forming a concave active cleft. The beta-1,3-1,4-cellotriose with subsites -3 to -1 bound to the active cleft of TFsbeta-glucanase with its reducing end subsite -1 close to the key catalytic residues Glu56 and Glu60. All three subsites of the beta-1,3-1,4-cellotriose adopted a relaxed C(1)4 conformation, with a beta-1,3 glycosidic linkage between subsites -2 and -1, and a beta-1,4 glycosidic linkage between subsites -3 and -2. On the basis of the enzyme-product complex structure observed in this study, a catalytic mechanism and substrate binding conformation of the active site of TFsbeta-glucanase is proposed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cellulose / chemistry
  • Cellulose / metabolism*
  • Crystallography, X-Ray
  • Endo-1,3(4)-beta-Glucanase / chemistry*
  • Endo-1,3(4)-beta-Glucanase / genetics
  • Endo-1,3(4)-beta-Glucanase / metabolism*
  • Fibrobacter / enzymology*
  • Fibrobacter / genetics
  • Models, Molecular
  • Oligosaccharides / chemistry*
  • Oligosaccharides / metabolism*
  • Protein Structure, Quaternary
  • Protein Structure, Tertiary
  • Substrate Specificity
  • Trioses / chemistry
  • Trioses / metabolism*

Substances

  • Oligosaccharides
  • Trioses
  • beta-1,3-1,4-cellotriose
  • Cellulose
  • Endo-1,3(4)-beta-Glucanase

Associated data

  • PDB/1ZM1