Binding of misacylated tRNAs to the ribosomal A site

RNA. 2005 Nov;11(11):1610-5. doi: 10.1261/rna.2130505.

Abstract

To test whether the ribosome displays specificity for the esterified amino acid and the tRNA body of an aminoacyl-tRNA (aa-tRNA), the stabilities of 4 correctly acylated and 12 misacylated tRNAs in the ribosomal A site were determined. By introducing the GAC (valine) anticodon into each tRNA, a constant anticodon.codon interaction was maintained, thus removing concern that different anticodon.codon strengths might affect the binding of the different aa-tRNAs to the A site. Surprisingly, all 16 aa-tRNAs displayed similar dissociation rate constants from the A site. These results suggest that either the ribosome is not specific for different amino acids and tRNA bodies when intact aa-tRNAs are used or the specificity for the amino acid side chain and tRNA body is masked by a conformational change upon aa-tRNA release.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Acylation
  • Anticodon / metabolism
  • Base Sequence
  • Binding Sites
  • Codon / metabolism*
  • Escherichia coli / metabolism
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Peptide Elongation Factor Tu / metabolism
  • Protein Biosynthesis
  • RNA, Messenger / metabolism
  • RNA, Transfer / metabolism*
  • Ribosomes / metabolism*
  • Transfer RNA Aminoacylation*

Substances

  • Anticodon
  • Codon
  • RNA, Messenger
  • RNA, Transfer
  • Peptide Elongation Factor Tu