Single-stranded DNA mimicry in the p53 transactivation domain interaction with replication protein A

Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15412-7. doi: 10.1073/pnas.0504614102. Epub 2005 Oct 17.

Abstract

One of many protein-protein interactions modulated upon DNA damage is that of the single-stranded DNA-binding protein, replication protein A (RPA), with the p53 tumor suppressor. Here we report the crystal structure of RPA residues 1-120 (RPA70N) bound to the N-terminal transactivation domain of p53 (residues 37-57; p53N) and, by using NMR spectroscopy, characterize two mechanisms by which the RPA/p53 interaction can be modulated. RPA70N forms an oligonucleotide/oligosaccharide-binding fold, similar to that previously observed for the ssDNA-binding domains of RPA. In contrast, the N-terminal p53 transactivation domain is largely disordered in solution, but residues 37-57 fold into two amphipathic helices, H1 and H2, upon binding with RPA70N. The H2 helix of p53 structurally mimics the binding of ssDNA to the oligonucleotide/oligosaccharide-binding fold. NMR experiments confirmed that both ssDNA and an acidic peptide mimicking a phosphorylated form of RPA32N can independently compete the acidic p53N out of the binding site. Taken together, our data suggest a mechanism for DNA damage signaling that can explain a threshold response to DNA damage.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Binding, Competitive
  • DNA Damage
  • DNA, Single-Stranded / chemistry*
  • Humans
  • Molecular Sequence Data
  • Phosphorylation
  • Protein Folding
  • Protein Structure, Tertiary
  • Replication Protein A / chemistry*
  • Replication Protein A / metabolism
  • Transcriptional Activation*
  • Tumor Suppressor Protein p53 / chemistry*

Substances

  • DNA, Single-Stranded
  • RPA1 protein, human
  • Replication Protein A
  • Tumor Suppressor Protein p53

Associated data

  • PDB/2B29
  • PDB/2B3G